| Program name | Description |
| abiview |
Display the trace in an ABI sequencer file
|
| coderet |
Extract CDS, mRNA and translations from feature tables
|
| entret |
Retrieve sequence entries from flatfile databases and files
|
| extractalign |
Extract regions from a sequence alignment
|
| infoalign |
Display basic information about a multiple sequence alignment
|
| infoseq |
Display basic information about sequences
|
| refseqget |
Get reference sequence
|
| seqxref |
Retrieve all database cross-references for a sequence entry
|
| seqxrefget |
Retrieve all cross-referenced data for a sequence entry
|
| showalign |
Display a multiple sequence alignment in pretty format
|
| variationget |
Get sequence variations
|
| whichdb |
Search all sequence databases for an entry and retrieve it
|