As shown in the screenshot below, you can add flags to places on the map (in this case, Fremantle near Perth, Western Australia; near Moscow in Russia; and the Azores in the mid-Atlantic). These flags don't affect any other functionality - they just allows you to quickly locate places of interest.
You add flags by locating the mouse at the point where you want to appear, and using the right mouse button to select the the Flags... entry. You can select one of the three pre-defined flag colours (that is, Add Red, Add Green or Add Blue), or you can select a custom colour.
You use the same menu action to remove just one flag (whichever one is closest to the mouse when you make the Remove Flag selection; or to remove all the flags, using the Remove All Flags.
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