@name tophat-2.1.2_3
@portname tophat
@portepoch 0
@portversion 2.1.2
@portrevision 3
@archs x86_64
@pkgdep python27-2.7.18_2
@pkgdep zlib-1.2.11_0
@pkgdep samtools-0.1-0.1.20_0
@pkgdep seqan-1-1.4.2_0
@pkgdep boost176-1.76.0_0
@pkgdep py27-intervaltree2-2.1.0_0
@pkgdep py27-sortedcontainers-2.3.0_0
@pkgdep bowtie2-2.4.1_0
opt/local/bin/bam2fastx
@comment MD5:754b2effc024ccf18ff1794c8e1c3948
@comment binary:1
opt/local/bin/bam_merge
@comment MD5:72823e2e88c69e81015fb18e855cdda1
@comment binary:1
opt/local/bin/bed_to_juncs
@comment MD5:3848d4fbbfd77604fa7af435888576d9
@comment binary:0
opt/local/bin/contig_to_chr_coords
@comment MD5:0ee6af414571bf2f706d4d121d89d6b4
@comment binary:0
opt/local/bin/fix_map_ordering
@comment MD5:2a83b8c0605c25b8127849eeeb23accd
@comment binary:1
opt/local/bin/gtf_juncs
@comment MD5:12b966a0a5052d014e32a44e98a06abc
@comment binary:1
opt/local/bin/gtf_to_fasta
@comment MD5:5d43442dc7c88f0e131e57e303abe69b
@comment binary:1
opt/local/bin/juncs_db
@comment MD5:aacffa4fc17b94c4c989f1080b27b80d
@comment binary:1
opt/local/bin/long_spanning_reads
@comment MD5:3a5373cc5cedfab835e6c92263a61a0d
@comment binary:1
opt/local/bin/map2gtf
@comment MD5:8f270b6172bafe7415db6b8ea328faa7
@comment binary:1
opt/local/bin/prep_reads
@comment MD5:291778ac50d420d2aacb09f14dced83a
@comment binary:1
opt/local/bin/sam_juncs
@comment MD5:6e507377e376f2368d534e118caec5e7
@comment binary:1
opt/local/bin/segment_juncs
@comment MD5:f2622ea48dc72333e2aa80733e9644cf
@comment binary:1
opt/local/bin/sra_to_solid
@comment MD5:a37cded61751f2ec37200b349668ba31
@comment binary:0
opt/local/bin/tophat
@comment MD5:835c9029bef9ca8d48e1c9edeb58bc5c
@comment binary:0
opt/local/bin/tophat-fusion-post
@comment MD5:fd8487598334d0678963d8f6c5602f09
@comment binary:0
opt/local/bin/tophat2
@comment MD5:2caaa3100672571f05f4d737ce8cc7bf
@comment binary:0
opt/local/bin/tophat_reports
@comment MD5:7a38c0a7d4bf3bcb78042f22c7d22661
@comment binary:1
opt/local/libexec/tophat/lib/libgc.a
@comment MD5:685fe94d70e5ff9011ab14d003f84e3f
@comment binary:0
opt/local/libexec/tophat/lib/libtophat.a
@comment MD5:c423090eea4d95e211da30f9116a9f9d
@comment binary:0
@ignore
+COMMENT
@ignore
+CONTENTS
@ignore
+DESC
@ignore
+PORTFILE
@ignore
+STATE
@cxx_stdlib libc++
@cxx_stdlib_overridden 0
