Diffusion Distance for Complex Networks

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Documentation for package ‘diffudist’ version 1.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

eigenMapMatMult	Matrix Multiplication using RcppEigen
eigenMatMult	Matrix Multiplication using RcppEigen
getDiffusionProbabilityMatrix	Diffusion Probability Matrix
getDistanceMatrix	Diffusion Distance Matrix
getLaplacianMatrix	Evaluate a Laplacian Matrix
getMeanDistanceMatrix	Mean distance matrix
get_DDM	Diffusion Distance Matrix
get_ddm_from_eigendec	Distance Matrix from Laplacian spectral decomposition
get_DDM_from_Pi	Diffusion distance matrix from a custom transition matrix
get_DDM_from_T	Diffusion distance matrix from a custom transition matrix
get_diffusion_probability_matrix	Diffusion Probability Matrix
get_diffusion_probability_matrix_from_Pi	Diffusion probability matrix from transition matrix
get_diffusion_probability_matrix_from_T	Diffusion probability matrix from transition matrix
get_diffu_Pt	Diffusion Probability Matrix
get_diffu_Pt_from_Pi	Diffusion probability matrix from transition matrix
get_diffu_Pt_from_T	Diffusion probability matrix from transition matrix
get_distance_matrix	Diffusion Distance Matrix
get_distance_matrix_from_Pi	Diffusion distance matrix from a custom transition matrix
get_distance_matrix_from_T	Diffusion distance matrix from a custom transition matrix
get_laplacian	Evaluate a Laplacian Matrix
get_mean_distance_matrix	Mean distance matrix
get_spectral_decomp	Laplacian Spectral Decomposition
plotHeatmap	Plot distance matrix as heatmap
plot_distance_matrix	Plot distance matrix