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RNAlib-2.4.17
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Energy evaluation of multibranch loops for MFE and partition function calculations. More...
Include dependency graph for multibranch.h:
This graph shows which files directly or indirectly include this file:Go to the source code of this file.
Functions | |
| int | vrna_BT_mb_loop (vrna_fold_compound_t *fc, int *i, int *j, int *k, int en, int *component1, int *component2) |
| Backtrack the decomposition of a multi branch loop closed by | |
Basic free energy interface | |
| int | vrna_E_mb_loop_stack (vrna_fold_compound_t *fc, int i, int j) |
| Evaluate energy of a multi branch helices stacking onto closing pair (i,j) More... | |
| int | vrna_E_mb_loop_fast (vrna_fold_compound_t *fc, int i, int j, int *dmli1, int *dmli2) |
| int | E_ml_rightmost_stem (int i, int j, vrna_fold_compound_t *fc) |
| int | vrna_E_ml_stems_fast (vrna_fold_compound_t *fc, int i, int j, int *fmi, int *dmli) |
Boltzmann weight (partition function) interface | |
| typedef struct vrna_mx_pf_aux_ml_s * | vrna_mx_pf_aux_ml_t |
| Auxiliary helper arrays for fast exterior loop computations. More... | |
| FLT_OR_DBL | vrna_exp_E_mb_loop_fast (vrna_fold_compound_t *fc, int i, int j, vrna_mx_pf_aux_ml_t aux_mx) |
| vrna_mx_pf_aux_ml_t | vrna_exp_E_ml_fast_init (vrna_fold_compound_t *fc) |
| void | vrna_exp_E_ml_fast_rotate (vrna_mx_pf_aux_ml_t aux_mx) |
| void | vrna_exp_E_ml_fast_free (vrna_mx_pf_aux_ml_t aux_mx) |
| const FLT_OR_DBL * | vrna_exp_E_ml_fast_qqm (struct vrna_mx_pf_aux_ml_s *aux_mx) |
| const FLT_OR_DBL * | vrna_exp_E_ml_fast_qqm1 (struct vrna_mx_pf_aux_ml_s *aux_mx) |
| FLT_OR_DBL | vrna_exp_E_ml_fast (vrna_fold_compound_t *fc, int i, int j, vrna_mx_pf_aux_ml_t aux_mx) |
Energy evaluation of multibranch loops for MFE and partition function calculations.
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