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| vrna_plot_layout_t * | vrna_plot_layout (const char *structure, unsigned int plot_type) |
| | Create a layout (coordinates, etc.) for a secondary structure plot. More...
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| vrna_plot_layout_t * | vrna_plot_layout_simple (const char *structure) |
| | Create a layout (coordinates, etc.) for a simple secondary structure plot. More...
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| vrna_plot_layout_t * | vrna_plot_layout_naview (const char *structure) |
| | Create a layout (coordinates, etc.) for a secondary structure plot using the Naview Algorithm [5]. More...
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| vrna_plot_layout_t * | vrna_plot_layout_circular (const char *structure) |
| | Create a layout (coordinates, etc.) for a circular secondary structure plot. More...
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| vrna_plot_layout_t * | vrna_plot_layout_turtle (const char *structure) |
| | Create a layout (coordinates, etc.) for a secondary structure plot using the Turtle Algorithm [23]. More...
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| vrna_plot_layout_t * | vrna_plot_layout_puzzler (const char *structure, vrna_plot_options_puzzler_t *options) |
| | Create a layout (coordinates, etc.) for a secondary structure plot using the RNApuzzler Algorithm [23]. More...
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| void | vrna_plot_layout_free (vrna_plot_layout_t *layout) |
| | Free memory occupied by a figure layout data structure. More...
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| int | vrna_plot_coords (const char *structure, float **x, float **y, int plot_type) |
| | Compute nucleotide coordinates for secondary structure plot. More...
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| int | vrna_plot_coords_pt (const short *pt, float **x, float **y, int plot_type) |
| | Compute nucleotide coordinates for secondary structure plot. More...
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| int | vrna_plot_coords_simple (const char *structure, float **x, float **y) |
| | Compute nucleotide coordinates for secondary structure plot the Simple way More...
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| int | vrna_plot_coords_simple_pt (const short *pt, float **x, float **y) |
| | Compute nucleotide coordinates for secondary structure plot the Simple way More...
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| int | vrna_plot_coords_circular (const char *structure, float **x, float **y) |
| | Compute coordinates of nucleotides mapped in equal distancies onto a unit circle. More...
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| int | vrna_plot_coords_circular_pt (const short *pt, float **x, float **y) |
| | Compute nucleotide coordinates for a Circular Plot More...
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| int | simple_xy_coordinates (short *pair_table, float *X, float *Y) |
| | Calculate nucleotide coordinates for secondary structure plot the Simple way More...
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| int | simple_circplot_coordinates (short *pair_table, float *x, float *y) |
| | Calculate nucleotide coordinates for Circular Plot More...
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Secondary structure plot layout algorithms.